due the lack of information (FAQ - Read before posting , Guidelines for reporting), I can only give you a general answer.
I have tried the JJEDI STAR @KATL with the current AIRAC 2013 rev. 2 and I can´t reproduce your report. I see all waypoints and all altitudes:
To the reported KORD issue:
This is a sim issue and has nothing todo with the navdata updates. There is a missing runway at KORD which exists in real: 09C/27C
This runway is missing in the default/stock data and what I know also in the FSDT addon scenery. We may only add runways, when the airport is general missing from the stock data, but we may NOT add runways when he exists. The result of that is, that when a runway is missing and a procedure can´t be assigned to the missing runway, ALL terminal procedures will be disabled at this airport. This is per design in the sim and has nothing to do with the data - the data are included in our package but will not be shown due this limitation.
Again, that happens on ALL worldwide airport, which are existing in the stock data but where runways are missing or have not the real-world runway-idents. On KORD in the default data (means our data are not installed!) this runway (09C/27C) is missing and therefore the sim suppress all procedures.
Hope that helps