Hi,
I have checked your report:
As you have likely figured out on your own, the stock FBPM in MSFS is outdated because MSFS 2020 shows only one runway, 11/29, and not the two runways, 11/29 and 13/31, as in real life. When you check the charts, you will see that all procedures are assigned to 13/31. However, when this runway doesn´t exist in the sim, the sim cannot assign it to the runway and suppress it. That´s not a navigraph issue, it is a MSFS2020 limitation and expected …
Therefore, please report this to ASOBO/MS so that they can correct the runways; we may not modify any scenery.
Regarding your second example, FAOR - I have tested this with the stock scenery, the stock C172 equipped with the G1000, and our latest AIRAC 2509, and I cannot reproduce it.
Here are the SIDs:
… the STARs:
… and the IAPs:
But I have also tested this with the ATR72, and also here:
SIDs:
STARs:
… and IAPs:
Cheers,
Richard